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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. NSFL1C, NSFL1 (p97) cofactor (p47)
Sequence ID:NM_001206736
NM_016143
NM_018839
Entrez Gene ID:55968
Ensembl ID:ENSG00000088833

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 1424184 - 1447482

 Exon Info From UCSC:
NM_016143
NM_018839

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3635947Full LengthBC002801NSFL1 (p97) cofactor (p47)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057227  NP_061327  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001206736 NP_001193665    
NM_016143 NP_057227 Q9UNZ2 UBX
SEP
NM_018839 NP_061327   UBX
SEP

Related Sequences

 
mRNAGenPeptSwissProt
AF078856 AAD44488 Q9UNZ2
Q53FE8
AF112211 AAF17199 Q9UNZ2
BC002801 AAH02801 Q9UNZ2
AF086909 AAP97139 Q9UNZ2
DQ893189 ABM84115  
DQ896513 ABM87512  
AK001511 BAA91731 Q9UNZ2
AK128722 BAC87590 Q6ZQU3
AK223334 BAD97054 Q53FF5
AK223341 BAD97061 Q53FE8
AK315433 BAG37821 Q9UNZ2
AK093845 BAG52771 Q53FE8
AK297403 BAG59842 Q9UNZ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NSFL1C NP_001193665 M.musculus Nsfl1c 386649 Gene Info NP_938085 96
R.norvegicus Nsfl1c 83809   NP_114187 96
A.gambiae AgaP_AGAP005122 1274800   XP_314003 44
D.melanogaster p47 35674   NP_610284 42
C.elegans ubxn-2 177057   NP_001023590 41
S.pombe ubx3 2543170   NP_593429 36
N.crassa NCU01100 3877799   XP_961712 33
S.cerevisiae SHP1 852222   NP_009495 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)