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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VPS4A, vacuolar protein sorting 4 homolog A (S. cerevisiae)
Sequence ID:NM_013245
Entrez Gene ID:27183
Ensembl ID:ENSG00000132612

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 69345330 - 69358946

 Exon Info From UCSC:
NM_013245

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5753632Full LengthBC047932vacuolar protein sorting 4 homolog A (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_037377  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013245 NP_037377 Q9UN37 AAA
MIT

Related Sequences

 
mRNAGenPeptSwissProt
AF155740 AAD42971 Q9UN37
AF159063 AAD49227 Q9UN37
AF112215 AAF17203 Q9UN37
BC035121 AAH35121 Q49AN7
BC047932 AAH47932 Q9UN37
AF255952 AAK52408 Q9UN37
AF132747 AAL75948 Q9UN37
EU831747 ACE86581  
AK000200 BAA91005 Q9NXK5
AK315026 BAG37514 Q9UN37
AL133634 CAB63758 Q9UF30

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS4A NP_037377 M.musculus Vps4a 116733 Gene Info NP_569053 99
R.norvegicus Vps4a 246772   NP_663711 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)