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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEPT11, Septin 11
Sequence ID:NM_018243
Entrez Gene ID:55752
Ensembl ID:ENSG00000138758

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 77870963 - 77957127

NM_018243 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11897787089477871082
1903047791757777917691
3055007792675377926948
5016877793288777933073
6888497793600877936169
8509467794031777940413
94711157794165477941822
111612487794978177949913
124914367795193577952122
143755547795564977959766

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2966709Full LengthBC008083septin 11
3848367Full LengthBC063615septin 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060713  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018243 NP_060713 Q9NVA2 Septin

Related Sequences

 
mRNAGenPeptSwissProt
BC008083 AAH08083 Q9NVA2
BC063615 AAH63615 Q9NVA2
GU727629 ADU87631 Q9NVA2
AK001711 BAA91853 Q9NVA2
AK027279 BAB55014 Q96KC0
AK027633 BAB55250 Q9NVA2
AK302700 BAH13782 Q9NVA2
AL110300 CAB53741 Q9NVA2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEPT11 NP_060713 M.musculus Sept11 52398 Gene Info NP_001009818 100
R.norvegicus Sept11 305227   NP_001100678 100
A.gambiae AgaP_AGAP011532 1271224   XP_309977 73
D.melanogaster Sep2 42438   NP_524417 73
C.elegans unc-61 179976   NP_001041198 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)