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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAPGEF1, Rap guanine nucleotide exchange factor (GEF) 1
Sequence ID:NM_198679
NM_005312
Entrez Gene ID:2889
Ensembl ID:ENSG00000107263

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 134452156 - 134453868

 Exon Info From UCSC:
NM_198679
NM_005312

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6051007Full LengthBC041710Rap guanine nucleotide exchange factor (GEF) 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005303  NP_941372  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005312 NP_005303 Q13905 RasGEF
RasGEF_N
NM_198679 NP_941372   RasGEF
RasGEF_N

Related Sequences

 
mRNAGenPeptSwissProt
BC041710 AAH41710 Q13905
AF467069 AAP97718 Q7Z4P7
DQ925677 ABL59904 A5XEI4
DQ925678 ABL59905 A5XEI5
DQ925679 ABL59906 A5XEI6
DQ925680 ABL59907 A5XEI7
DQ925681 ABL59908 A5XEI8
DQ925682 ABL59909 A5XEI9
DQ925683 ABL59910 A5XEJ0
DQ925684 ABL59911 A5XEJ1
EU832841 ACE87852  
GQ129245 ACT64379  
D21239 BAA04770 Q13905
AK302763 BAG63974 B4DZ62
CR749354 CAH18207 Q68DL3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAPGEF1 NP_941372 M.musculus Rapgef1 107746 Gene Info NP_473391 93
A.gambiae AgaP_AGAP000932 1270418   XP_309117 46
D.melanogaster C3G 31618   NP_001138168 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta