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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATG13, Autophagy related 13
Sequence ID:NM_001205119
NM_001142673
NM_001205120
NM_014741
NM_001205121
NM_001205122
Entrez Gene ID:9776
Ensembl ID:ENSG00000175224

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 46639145 - 46696062

 Exon Info From UCSC:
NM_001142673
NM_014741

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961127Full LengthBC002378KIAA0652
3458359Full LengthBC001331KIAA0652
3936851Full LengthBC006191KIAA0652

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142673 NP_001136145 O75143  
NM_001205119 NP_001192048    
NM_001205120 NP_001192049    
NM_001205121 NP_001192050    
NM_001205122 NP_001192051    
NM_014741 NP_055556    

Related Sequences

 
mRNAGenPeptSwissProt
BC001331 AAH01331 O75143
BC002378 AAH02378 O75143
BC006191 AAH06191 O75143
GQ129361 ACT64495  
GQ129362 ACT64496  
HQ448260 ADQ32740  
AB014552 BAA31627 O75143
AK023867 BAB14707 O75143
AK223603 BAD97323 Q53EN6
AK289641 BAF82330 A8K0S6
AK293109 BAF85798 A8KAP4
AK294110 BAG57445 O75143
AK296526 BAG59157 B4DKE5
AK315925 BAH14296 B7Z9G0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATG13 NP_001136145 R.norvegicus Atg13 362164   XP_342466 95
M.musculus Atg13 51897 Gene Info NP_663503 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)