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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNF8, SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
Sequence ID:NM_007241
Entrez Gene ID:11267
Ensembl ID:ENSG00000159210

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 47007750 - 47022152

NM_007241 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
165294700746047007973
5306044700900447009078
6057464701056647010707
7478194701353147013603
8209244701438147014485
92510634701828547018423
106411144702128647021336
111512264702204247022153

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3452153Full LengthBC008976SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
3900806Full LengthBC038830SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009172  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007241 NP_009172 Q96H20 EAP30

Related Sequences

 
mRNAGenPeptSwissProt
AF156102 AAD46560 Q96H20
BC008976 AAH08976 Q96H20
BC038830 AAH38830 Q96H20
HQ447340 ADQ31826  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNF8 NP_009172 M.musculus Snf8 27681 Gene Info NP_291046 98
R.norvegicus Snf8 287645   NP_001007805 98
A.gambiae AgaP_AGAP000771 1272363   XP_311310 53
D.melanogaster lsn 42572   NP_650987 52
A.thaliana VPS22 828812   NP_001119065 50
C.elegans C27F2.5 175672   NP_498052 50
N.crassa NCU07843 3879268   XP_963104 43
S.cerevisiae SNF8 856105   NP_015323 38
S.pombe dot2 2541147   NP_595503 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)