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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VPS4B, vacuolar protein sorting 4 homolog B (S. cerevisiae)
Sequence ID:NM_004869
Entrez Gene ID:9525
Ensembl ID:ENSG00000119541

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18q21.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 61057783 - 61089680

 Exon Info From UCSC:
NM_004869

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6042862Full LengthBC039574vacuolar protein sorting 4 homolog B (S. cerevisiae)
3892403IncompleteBC009692vacuolar protein sorting 4 homolog B (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004860  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004869 NP_004860 O75351 AAA
MIT

Related Sequences

 
mRNAGenPeptSwissProt
AF038960 AAC39874 O75351
AF195514 AAG33022 O75351
BC009692 AAH09692 Q6PJZ4
BC039574 AAH39574 O75351
AY232629 AAP59551 O75351
EU831748 ACE86582  
EU831666 ACE87266  
HQ448561 ADQ33040  
AK290932 BAF83621 A8K4G7
AK291253 BAF83942 A8K5D8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS4B NP_004860 M.musculus Vps4b 20479 Gene Info NP_033216 95
R.norvegicus Vps4b 360834   NP_001020887 95
A.gambiae AgaP_AGAP000625 1271692   XP_310453 77
D.melanogaster Vps4 32777   NP_573258 76
C.elegans vps-4 189590   NP_490816 71
S.cerevisiae VPS4 856303   NP_015499 64
N.crassa NCU06942 3874195   XP_958048 62
S.pombe vps4 2542054   NP_593086 60
A.thaliana SKD1 817306   NP_180328 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)