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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TRAPPC10, Trafficking protein particle complex 10
Sequence ID:NM_003274
RefSeqGene ID:NG_008658
Entrez Gene ID:7109
Ensembl ID:ENSG00000160218

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 45503033 - 45523527

 Exon Info From UCSC:
NM_003274

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8069234Full LengthBC101728trafficking protein particle complex 10

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003274 NP_003265 P48553  

Related Sequences

 
mRNAGenPeptSwissProt
U19252 AAC50134 P48553
U61500 AAC51826 P48553
BC046241 AAH46241 Q86SI7
BC052247 AAH52247 Q86SI7
BC094823 AAH94823 Q86SI7
BC101728 AAI01729 P48553
HQ447562 ADQ32048  
AK295369 BAG58329 B4DI17
AK300912 BAG62546 B4DV34
AK303570 BAG64591 B4E0X9
AL833668 CAI46146 Q5JPB5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRAPPC10 NP_003265 M.musculus Trappc10 216131 Gene Info NP_001074524 90
R.norvegicus Trappc10 309678   XP_228065 89
A.gambiae AgaP_AGAP002242 1269319   XP_307942 35
D.melanogaster CG6623 41833   NP_650431 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)