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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCG1, ATP-binding cassette, sub-family G (WHITE), member 1
Sequence ID:NM_004915
NM_016818
NM_207174
NM_207627
NM_207628
NM_207629
NM_207630
Entrez Gene ID:9619
Ensembl ID:ENSG00000160179

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 43710237 - 43717279

 Exon Info From UCSC:
NM_004915
NM_016818
NM_207174
NM_207627
NM_207628
NM_207629

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5198758Full LengthBC029158ATP-binding cassette, sub-family G (WHITE), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004906  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004915 NP_004906 P45844 ABC_tran
ABC2_membrane
NM_016818 NP_058198    
NM_207174 NP_997057    
NM_207627 NP_997510    
NM_207628 NP_997511    
NM_207629 NP_997512    

Related Sequences

 
mRNAGenPeptSwissProt
AF038175 AAB97364 O43576
BC029158 AAH29158 P45844
AF323660 AAK28838 P45844
AF323661 AAK28839 P45844
AF323662 AAK28840 P45844
AF323663 AAK28841 P45844
AF323664 AAK28842 P45844
AY048757 AAL06598 P45844
DQ891343 ABM82269  
EU176570 ABW03371  
EU832827 ACE87838  
GQ129336 ACT64470  
AK292152 BAF84841 A8K7Y7
AK298491 BAG60699 B4DPT7
X91249 CAA62631 P45844

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCG1 NP_004906 R.norvegicus Abcg1 85264   NP_445954 97
M.musculus Abcg1 11307 Gene Info NP_033723 97
A.gambiae AgaP_AGAP001858 1281268   XP_321211 62
D.melanogaster Atet 33636   NP_001097078 56
C.elegans wht-5 178182   NP_502352 33
C.elegans wht-9 190068   NP_499616 33
A.thaliana WBC27 820512   NP_187928 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta