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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOHLH2, Spermatogenesis and oogenesis specific basic helix-loop-helix 2
Sequence ID:NM_001198910
NM_017826
Entrez Gene ID:54937
Ensembl ID:ENSG00000120669

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 36742353 - 36788676


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4829809Full LengthBC025383spermatogenesis and oogenesis specific basic helix-loop-helix 2
5166996IncompleteBC037403spermatogenesis and oogenesis specific basic helix-loop-helix 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060296  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001198910 NP_001185839    
NM_017826 NP_060296 Q9NX45 HLH

Related Sequences

 
mRNAGenPeptSwissProt
BC025383 AAH25383 Q9NX45
AY884305 AAW78547 Q9NX45
AK000456 BAA91175 Q9NX45
AK301863 BAG63302 Q9NX45

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOHLH2 NP_060296 R.norvegicus Sohlh2 619575   NP_001030133 55
M.musculus Sohlh2 74434 Gene Info NP_083213 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)