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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PHF17, PHD finger protein 17
Sequence ID:NM_024900
NM_199320
Entrez Gene ID:79960
Ensembl ID:ENSG00000077684

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q26-q27Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 129770257 - 129794438

 Exon Info From UCSC:
NM_024900
NM_199320

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5111727Full LengthBC032376PHD finger protein 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079176  NP_955352  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024900 NP_079176   PHD
NM_199320 NP_955352 Q6IE81 PHD

Related Sequences

 
mRNAGenPeptSwissProt
BC032376 AAH32376 Q6IE81
AF520952 AAM95612 Q6IE81
DQ891572 ABM82498  
DQ894766 ABM85692  
AK026132 BAB15371 Q6IE81
AB058710 BAB47436 Q6IE81
AK027620 BAB55239 Q6IE81
AK074986 BAC11335 Q6IE81
AK127326 BAC86931 Q6IE81
AK297357 BAG59805 B4DM93
AK304235 BAG65104 B4E2E2
AK304815 BAG65565 B4E3Q3
BN000287 CAE30500 Q6IE81

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PHF17 NP_955352 R.norvegicus Phf17 310352   NP_001101140 95
M.musculus Phf17 269424 Gene Info NP_758507 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)