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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM2A, lysine (K)-specific demethylase 2A
Sequence ID:NM_001256405
NM_012308
NR_027473
Entrez Gene ID:22992
Ensembl ID:ENSG00000173120

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 66887422 - 67023822


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5270744Full LengthBC047371F-box and leucine-rich repeat protein 11
5296445Full LengthBC047486F-box and leucine-rich repeat protein 11
5534384Full LengthBC064360F-box and leucine-rich repeat protein 11
3357072IncompleteBC001203F-box and leucine-rich repeat protein 11
6171996IncompleteBC056905F-box and leucine-rich repeat protein 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036440  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001256405 NP_001243334      
NM_012308 NP_036440 Q9Y2K7 EC 1.14.11.27 F-box
zf-CXXC
JmjC

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF179221 AAD56012 Q9Y2K7 EC 1.14.11.27
BC001203 AAH01203 Q9Y2K7 EC 1.14.11.27
BC047371 AAH47371 Q9Y2K7 EC 1.14.11.27
BC047486 AAH47486 Q9Y2K7 EC 1.14.11.27
BC064360 AAH64360 Q9Y2K7 EC 1.14.11.27
JQ710741 AFK81540 I3VM53  
JQ710742 AFK81541 I3VM54  
JQ710743 AFK81542 I3VM55  
JQ710744 AFK81543 D4QA03  
AB023221 BAA76848 Q9Y2K7 EC 1.14.11.27
AK024505 BAB15795 Q9Y2K7 EC 1.14.11.27
AK299725 BAG61623 B4DSG1  
AB490246 BAJ05817 D4QA03  
AL117517 CAH10721 Q9Y2K7 EC 1.14.11.27
XM_001721679 XP_001721731    
XM_001722145 XP_001722197    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM2A NP_036440 R.norvegicus Kdm2a 361700   NP_001101985 98
M.musculus Kdm2a 225876 Gene Info NP_001001984 97
A.gambiae AgaP_AGAP001895 1281229   XP_321169 51
D.melanogaster CG11033 41090   NP_649864 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)