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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ARPC1A, actin related protein 2/3 complex, subunit 1A, 41kDa
Sequence ID:NM_001190996
NM_006409
Entrez Gene ID:10552
Ensembl ID:ENSG00000241685

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 98923562 - 98963884

 Exon Info From UCSC:
NM_001190996
NM_006409

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6018804Full LengthBC039594actin related protein 2/3 complex, subunit 1A, 41kDa
6473050Full LengthBC047889actin related protein 2/3 complex, subunit 1A, 41kDa
6514889Full LengthBC054027actin related protein 2/3 complex, subunit 1A, 41kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006400  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190996 NP_001177925    
NM_006409 NP_006400 Q92747 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC039594 AAH39594 Q92747
BC047889 AAH47889 Q92747
BC054027 AAH54027 Q92747
EU832206 ACE86776  
EU832112 ACE87462  
JF432387 ADZ15604  
AB209059 BAD92296 Q59GQ0
AK223015 BAD96735 Q53GB6
Y08999 CAA70203 Q92747

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARPC1A NP_006400 M.musculus Arpc1a 56443 Gene Info NP_062741 99
D.melanogaster Sop2 34793   NP_476596 59
C.elegans arx-3 3565442   NP_499570 58
A.gambiae AgaP_AGAP008908 1279875   XP_319655 57
S.pombe arc1 2540002   NP_595909 49
N.crassa NCU02781 3880425   XP_964276 45
S.cerevisiae ARC40 852536   NP_009793 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)