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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEPHS1, selenophosphate synthetase 1
Sequence ID:NM_001195602
NM_001195604
NM_012247
Entrez Gene ID:22929
Ensembl ID:ENSG00000086475

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10p14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 13360082 - 13379583

Transcript StartTranscript EndChromosomal Start Chromosomal End
1612891336008213361355
129015021336483413365046
150316021337035013370449
160316931337169713371787
169418481337581613375970
184919561337824213378349
195720601338070413380807
206123311338675713387027
233226121338999913390279

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3449821Full LengthBC000941selenophosphate synthetase 1
6186560Full LengthBC063816selenophosphate synthetase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036379  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001195602 NP_001182531      
NM_001195604 NP_001182533      
NM_012247 NP_036379 P49903 EC 2.7.9.3 AIRS
AIRS_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U34044 AAA87567 P49903 EC 2.7.9.3
BC000941 AAH00941 P49903 EC 2.7.9.3
BC063816 AAH63816 P49903 EC 2.7.9.3
DQ894137 ABM85063    
GU954545 ADF78120 D3DRS9  
GU954546 ADF78121 B4DWK0  
GU954547 ADF78122 Q5T5U9  
GU954548 ADF78123 D6PSQ9  
GU954549 ADF78124 D6PSQ9  
AK297129 BAG59633 B4DLS1  
AK301568 BAG63062 B4DWK0  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEPHS1 NP_036379 M.musculus Sephs1 109079 Gene Info NP_780609 99
R.norvegicus Sephs1 291314   NP_001098100 99
D.melanogaster SelD 36587   NP_725374 73
A.gambiae AgaP_AGAP007967 1277983   XP_317503 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)