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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SMPDL3B, sphingomyelin phosphodiesterase, acid-like 3B
Sequence ID:NM_001009568
NM_014474
Entrez Gene ID:27293
Ensembl ID:ENSG00000130768

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 28261620 - 28285662

 Exon Info From UCSC:
NM_001009568
NM_014474

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4865268Full LengthBC014444sphingomyelin phosphodiesterase, acid-like 3B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055289  NP_001009568  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001009568 NP_001009568   Metallophos
NM_014474 NP_055289 Q92485 Metallophos

Related Sequences

 
mRNAGenPeptSwissProt
BC014444 AAH14444 Q92485
AK293489 BAG56976 B4DE65
AK293566 BAG57037 B4DEC6
AK301349 BAG62896 B4DW34
AK316500 BAH14871 Q92485
Y08134 CAA69328 Q92485

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMPDL3B NP_055289 M.musculus Smpdl3b 100340 Gene Info NP_598649 75
R.norvegicus Smpdl3b 362619   NP_001020908 74
D.melanogaster CG32052 326184   NP_729555 40
A.gambiae AgaP_AGAP005806 1276475   XP_315822 38
C.elegans ZK856.5 191439   NP_505620 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)