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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIM16, tripartite motif containing 16
Sequence ID:NM_006470
Entrez Gene ID:10626
Ensembl ID:ENSG00000221926

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 15531280 - 15555150

NM_006470 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2112521553128015532511
125313481553493215535027
134915141553582215535987
151517481553934915539582
174918441554603415546129
184527001555440415555259
270128051558048915580593
280628941558417815584266
289529201558616715586192

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6088764Full LengthBC067096tripartite motif-containing 16
6263729Full LengthBC053514tripartite motif-containing 16
3451349IncompleteBC001564tripartite motif-containing 16
4638241IncompleteBC015674tripartite motif-containing 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006461  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006470 NP_006461 O95361 SPRY
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
AF096870 AAC79080 O95361
BC001564 AAH01564 O95361
BC053514 AAH53514 O95361
BC067096 AAH67096 O95361
EU446937 ABZ92466  
HQ257965 ADR82719  
AK314557 BAG37142 B2RB95
AK002035 BAG51004 B3KMJ2
AK056026 BAG51608 B3KP96
CR457136 CAG33417 O95361

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIM16 NP_006461 M.musculus Trim16 94092 Gene Info NP_444399 79
R.norvegicus Trim16 303214   NP_001128505 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)