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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RNF13, ring finger protein 13
Sequence ID:NM_007282
NM_183381
NM_183382
NM_183383
NM_183384
Entrez Gene ID:11342
Ensembl ID:ENSG00000082996

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 149531014 - 149679915

 Exon Info From UCSC:
NM_007282
NM_183381

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3683407Full LengthBC009781ring finger protein 13
4274992Full LengthBC009803ring finger protein 13
4271414IncompleteBC017878ring finger protein 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_899237  NP_009213  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007282 NP_009213 O43567 zf-C3HC4
PA
NM_183381 NP_899237 O43567 zf-C3HC4
PA

Related Sequences

 
mRNAGenPeptSwissProt
AF037204 AAC03769 O43567
AF070558 AAC28641 O43567
BC009781 AAH09781 O43567
BC009803 AAH09803 O43567
BC017878 AAH17878 Q05D66
EU446775 ABZ92304  
JF432509 ADZ15726  
AK313304 BAG36109 O43567
AK090638 BAG52202 O43567
AK090771 BAG52224 B3KR12
CR456804 CAG33085 O43567

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RNF13 NP_009213 M.musculus Rnf13 24017 Gene Info NP_001106884 93
R.norvegicus Rnf13 681578   NP_001102914 93
A.gambiae AgaP_AGAP002028 1281089   XP_321026 42
D.melanogaster CG10277 40791   NP_001097695 39
A.thaliana AT1G71980 843529   NP_177343 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)