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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HTR1B, 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled
Sequence ID:NM_000863
Entrez Gene ID:3351
Ensembl ID:ENSG00000135312

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 78171469 - 78173490

NM_000863 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111737817194778173119

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7216878Full LengthBC0690655-hydroxytryptamine (serotonin) receptor 1B
40004711Full LengthBC0962075-hydroxytryptamine (serotonin) receptor 1B
40004708IncompleteBC0962065-hydroxytryptamine (serotonin) receptor 1B
40004712IncompleteBC0962085-hydroxytryptamine (serotonin) receptor 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000854  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000863 NP_000854 P28222 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
M81590 AAA60316 P28222
BC069065 AAH69065 P28222
BC096206 AAH96206 P28222
BC096207 AAH96207 P28222
BC096208 AAH96208 P28222
AK290080 BAF82769 A8K215
AK315325 BAG37726 A8K215

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HTR1B NP_000854 R.norvegicus Htr1b 25075   NP_071561 94
M.musculus Htr1b 15551 Gene Info NP_034612 93
A.gambiae GPRNNA20 1274062   XP_313127 45
A.gambiae GPR5HT7 1274064   XP_313129 43
D.melanogaster 5-HT7 43669   NP_524599 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)