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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. WIPI2, WD repeat domain, phosphoinositide interacting 2
Sequence ID:NM_001033518
NM_001033519
NM_001033520
NM_015610
NM_016003
Entrez Gene ID:26100
Ensembl ID:ENSG00000157954

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 5253899 - 5270695

 Exon Info From UCSC:
NM_001033518
NM_001033519
NM_001033520
NM_015610
NM_016003

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3346710Full LengthBC007596WD repeat domain, phosphoinositide interacting 2
3842487Full LengthBC004116WD repeat domain, phosphoinositide interacting 2
3957981Full LengthBC021200WD repeat domain, phosphoinositide interacting 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057087  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033518 NP_001028690    
NM_001033519 NP_001028691    
NM_001033520 NP_001028692    
NM_015610 NP_056425 Q9Y4P8  
NM_016003 NP_057087   WD40

Related Sequences

 
mRNAGenPeptSwissProt
AF151808 AAD34045 Q9Y4P8
BC004116 AAH04116 Q9Y4P8
BC007596 AAH07596 Q9Y4P8
BC021200 AAH21200 Q9Y4P8
AY691425 AAV80761 Q9Y4P8
AY691426 AAV80762 Q9Y4P8
AK124974 BAC86012 Q6ZV51
AK023041 BAG51152 B3KMZ0
AK024279 BAG51284 Q9Y4P8
AL080155 CAB45746 Q9Y4P8
CR533530 CAG38561 Q9Y4P8
BX537624 CAH56163 Q63Z38
AM392901 CAL37779  
AM393618 CAL38494  
AM393628 CAL38504  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens WIPI2 NP_057087 M.musculus Wipi2 74781 Gene Info NP_848485 97
R.norvegicus Wipi2 288498   NP_001007616 97
D.melanogaster Atg18 38913   NP_648184 64
A.gambiae AgaP_AGAP005910 1276577   XP_315940 63
S.pombe SPAC589.07c 2542180   NP_594055 44
N.crassa NCU03441 3872878   XP_956727 44
C.elegans atg-18 179246   NP_741576 43
S.cerevisiae ATG18 850577   NP_444297 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)