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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PPWD1, Peptidylprolyl isomerase domain and WD repeat containing 1
Sequence ID:NM_015342
Entrez Gene ID:23398
Ensembl ID:ENSG00000113593

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 64859116 - 64883376

 Exon Info From UCSC:
NM_015342

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4390706Full LengthBC015385peptidylprolyl isomerase domain and WD repeat containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056157  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_015342 NP_056157 Q96BP3 EC 5.2.1.8 Pro_isomerase
WD40

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC015385 AAH15385 Q96BP3 EC 5.2.1.8
GQ129262 ACT64396    
GQ129263 ACT64397    
D38552 BAA07555 Q96BP3 EC 5.2.1.8
AK298175 BAG60446 B4DP34  
AK300022 BAG61834 B4DT22  
AK301654 BAG63131 B4DWR9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PPWD1 NP_056157 M.musculus Ppwd1 238831 Gene Info NP_766395 97
R.norvegicus Ppwd1 294711   NP_001099876 97
A.gambiae AgaP_AGAP008660 1275510   XP_314761 61
D.melanogaster CG3511 37926   NP_611935 60
A.thaliana CYP71 823585   NP_190046 55
C.elegans cyn-15 173225   NP_493378 50
N.crassa NCU09819 3879908   XP_963759 49
S.pombe cyp9 2539557   NP_587769 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)