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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VNN1, vanin 1
Sequence ID:NM_004666
RefSeqGene ID:NG_012147
Entrez Gene ID:8876
Ensembl ID:ENSG00000112299

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q23-q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 133002728 - 133035188

NM_004666 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
22465133001997133004460
24662636133005473133005643
26372998133013361133013722
29993290133014162133014453
32913483133015128133015320
34843614133032847133032977
36153844133034964133035193

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40006204Full LengthBC096265vanin 1
40006205Full LengthBC096266vanin 1
40006207Full LengthBC096267vanin 1
40006208Full LengthBC096268vanin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004657  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_004666 NP_004657 O95497 EC 3.5.1.92 CN_hydrolase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U39664 AAF21453 O95497 EC 3.5.1.92
BC096265 AAH96265 O95497 EC 3.5.1.92
BC096266 AAH96266 O95497 EC 3.5.1.92
BC096267 AAH96267 O95497 EC 3.5.1.92
BC096268 AAH96268 O95497 EC 3.5.1.92
AK290425 BAF83114 O95497 EC 3.5.1.92
AK314265 BAG36929 B2RAN2  
AJ132099 CAA10568 O95497 EC 3.5.1.92

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VNN1 NP_004657 R.norvegicus Vnn1 29142   NP_001020794 79
M.musculus Vnn1 22361 Gene Info NP_035834 76
D.melanogaster CG32750 326238   NP_727067 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)