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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LIN9, Lin-9 homolog (C. elegans)
Sequence ID:NM_173083
NM_001270409
NM_001270410
Entrez Gene ID:286826
Ensembl ID:ENSG00000183814

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 226418849 - 226496873


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4837217Full LengthBC045625lin-9 homolog (C. elegans)
5297824IncompleteBC043444lin-9 homolog (C. elegans)
6156654IncompleteBC065302lin-9 homolog (C. elegans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775106  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270409 NP_001257338    
NM_001270410 NP_001257339    
NM_173083 NP_775106   DIRP

Related Sequences

 
mRNAGenPeptSwissProt
BC043444 AAH43444 Q5TKA1
BC045625 AAH45625 Q5TKA1
BC065302 AAH65302 Q6P142
AY166858 AAN87840 Q8IWQ2
AY166859 AAN87841 Q8IWQ1
AF190323 AAQ13710 Q5TKA1
AF190324 AAQ13711 Q5TKA1
AY786184 AAV41873 Q5TKA1
AK126177 BAC86475 Q5TKA1
BX537869 CAD97871 Q5TKA1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIN9 NP_775106 M.musculus Lin9 72568 Gene Info NP_001096652 97
R.norvegicus Lin9 689523   XP_001067807 97
D.melanogaster mip130 31153   NP_569958 44
C.elegans lin-9 176256   NP_001023015 36
A.gambiae AgaP_AGAP004624 4576786   XP_001237635 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)