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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. APOB, apolipoprotein B (including Ag(x) antigen)
Sequence ID:NM_000384
RefSeqGene ID:NG_011793
Entrez Gene ID:338
Ensembl ID:ENSG00000084674

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
HYPERCHOLESTEROLEMIA, DUE TO LIGAND-DEFECTIVE APO B 

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p24-p23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 21224301 - 21230897

 Exon Info From UCSC:
NM_000384

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9094271IncompleteBC172785apolipoprotein B (including Ag(x) antigen)
9094272IncompleteBC172786apolipoprotein B (including Ag(x) antigen)
9094273IncompleteBC172787apolipoprotein B (including Ag(x) antigen)
9094274IncompleteBC172788apolipoprotein B (including Ag(x) antigen)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000375  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000384 NP_000375 P04114 Vitellogenin_N
DUF1081

Related Sequences

 
mRNAGenPeptSwissProt
M18471 AAA35541 P04114
M19734 AAA35544 P04114
M36676 AAA35548 P04114
J02610 AAA35549 P04114
M17367 AAA51741 P04114
M12413 AAA51742 P04114
M10374 AAA51750 P04114
M12480 AAA51751 P04114
M14081 AAA51752 P04114
M12681 AAA51753 P04114
M18036 AAA51754 P78482
M17779 AAA51755 P04114
M31030 AAA51756 P04114
M15421 AAA51758 P04114
K03175 AAA51759 P04114
M14162 AAB04636 P04114
BC051278 AAH51278 Q7Z7Q0
GU014832 ACX32319  
HM487065 ADN03360 E1A689
AB208846 BAD92083 Q59HB3
AK290844 BAF83533 A8K479
X03045 CAA26850 P04114
X03324 CAA27043 Q13789
X03325 CAA27044 P04114
X03326 CAA27045 P04114
X04506 CAA28191 P04114
X04714 CAA28420 P04114

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APOB NP_000375 M.musculus Apob 238055 Gene Info NP_033823 71
R.norvegicus Apob 54225   NP_062160 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)