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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SOHLH1, spermatogenesis and oogenesis specific basic helix-loop-helix 1
Sequence ID:NM_001012415
NM_001101677
Entrez Gene ID:402381
Ensembl ID:ENSG00000165643

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 138588474 - 138591319

 Exon Info From UCSC:
NM_001012415
NM_001101677

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4826967Full LengthBC031861spermatogenesis and oogenesis specific basic helix-loop-helix 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001012415  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001012415 NP_001012415   HLH
NM_001101677 NP_001095147    

Related Sequences

 
mRNAGenPeptSwissProt
BC031861 AAH31861 Q5JUK2
AY884306 AAW78548 Q5JUK2
AY902244 AAW82617 Q5JUK2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOHLH1 NP_001095147 M.musculus Sohlh1 227631 Gene Info NP_001001714 50
R.norvegicus Sohlh1 362085   XP_342387 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)