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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCE1, ATP-binding cassette, sub-family E (OABP), member 1
Sequence ID:NM_001040876
NM_002940
Entrez Gene ID:6059
Ensembl ID:ENSG00000164163

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 146019481 - 146049667

 Exon Info From UCSC:
NM_001040876
NM_002940

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3909151Full LengthBC016283ATP-binding cassette, sub-family E (OABP), member 1
4396587IncompleteBC016988ATP-binding cassette, sub-family E (OABP), member 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001040876 NP_001035809    
NM_002940 NP_002931 P61221  

Related Sequences

 
mRNAGenPeptSwissProt
BC016283 AAH16283 P61221
BC016988 AAH16988 P61221
BT009779 AAP88781 P61221
AB062293 BAB93476 P61221
X74987 CAA52920 P61221
X76388 CAA53972 P61221

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCE1 NP_001035809 M.musculus Abce1 24015 Gene Info NP_056566 100
R.norvegicus Abce1 361390   NP_001101916 100
A.gambiae AgaP_AGAP002182 1269374   XP_308004 78
D.melanogaster pix 39027   NP_648272 77
A.thaliana RLI2 827661   NP_193656 76
N.crassa NCU03061 3880018   XP_963869 72
S.cerevisiae RLI1 851665   NP_010376 69
C.elegans abce-1 176733   NP_499717 67
S.pombe SPBC14F5.06 2539753   NP_596732 66
P.falciparum MAL13P1.344 813912   XP_001350392 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)