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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HSPE1, heat shock 10kDa protein 1 (chaperonin 10)
Sequence ID:NM_002157
RefSeqGene ID:NG_008914
Entrez Gene ID:3336
Ensembl ID:ENSG00000115541

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q33.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 198365124 - 198367983

NM_002157 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1443198364720198365162
444608198365797198365961
609698198367762198367851
699952198367932198368185

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4304224Full LengthBC023518heat shock 10kDa protein 1 (chaperonin 10)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002148  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002157 NP_002148 P61604 Cpn10

Related Sequences

 
mRNAGenPeptSwissProt
U07550 AAA50953 P61604
BC023518 AAH23518 P61604
DQ892960 ABM83886  
DQ896207 ABM87206  
AK312104 BAG35040 P61604
X75821 CAA53455 P61604
CR407688 CAG28616 P61604

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HSPE1 NP_002148 R.norvegicus Hspe1 25462   NP_037098 98
M.musculus Hspe1 15528 Gene Info NP_032329 96
A.gambiae AgaP_AGAP001502 1281670   XP_321619 64
C.elegans Y22D7AL.10 175315   NP_497428 63
D.melanogaster CG11267 39476   NP_648622 58
A.thaliana CPN10 838063   NP_563961 54
A.thaliana AT1G23100 838918   NP_173723 48
S.cerevisiae HSP10 854185   NP_014663 47
S.pombe hsp10 2539489   NP_588098 45
N.crassa NCU04334 3872462   XP_956315 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)