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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPL3, Ribosomal protein L3
Sequence ID:NM_000967
NM_001033853
Entrez Gene ID:6122
Ensembl ID:ENSG00000100316

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 39708888 - 39714597

 Exon Info From UCSC:
NM_000967
NM_001033853

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961541Full LengthBC002408ribosomal protein L3
3507481Full LengthBC008003ribosomal protein L3
3852576Full LengthBC063662ribosomal protein L3
3951917Full LengthBC012786ribosomal protein L3
4128023Full LengthBC014017ribosomal protein L3
4152521Full LengthBC013674ribosomal protein L3
4251511Full LengthBC008492ribosomal protein L3
4549682Full LengthBC012146ribosomal protein L3
4796724Full LengthBC036582ribosomal protein L3
4861546Full LengthBC015767ribosomal protein L3
6195715Full LengthBC088373ribosomal protein L3
6699816Full LengthBC107711ribosomal protein L3
3538792IncompleteBC022790ribosomal protein L3
3628762IncompleteBC004323ribosomal protein L3
4510463IncompleteBC033296ribosomal protein L3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000958  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000967 NP_000958 P39023 Ribosomal_L3
NM_001033853 NP_001029025    

Related Sequences

 
mRNAGenPeptSwissProt
M90054 AAA60291 P39023
L22453 AAA91344 P39023
BC002408 AAH02408 P39023
BC004323 AAH04323 Q9BT63
BC006483 AAH06483 P39023
BC008003 AAH08003 P39023
BC008492 AAH08492 Q96QL0
BC012146 AAH12146 P39023
BC012786 AAH12786 P39023
BC013674 AAH13674 P39023
BC014017 AAH14017 P39023
BC015032 AAH15032 P39023
BC015767 AAH15767 P39023
BC022790 AAH22790 Q8TBW1
BC036582 AAH36582 Q49AJ9
BC063662 AAH63662 P39023
BC088373 AAH88373 P39023
BC107711 AAI07712 P39023
AY320405 AAP73807 Q7Z5Z5
AB062291 BAB93474 P39023
AK315693 BAG38056 P39023
AK092695 BAG52598 B3KS36
AK297711 BAG60068 B4DN06
AB266619 BAM21009 G5E9G0
X73460 CAA51839 P39023
CR456566 CAG30452 P39023
CU013166 CAK54597  
CU013454 CAK54896  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL3 NP_000958 M.musculus Rpl3 27367 Gene Info NP_038790 99
R.norvegicus Rpl3 300079   NP_942048 99
D.melanogaster RpL3 41347   NP_524316 75
A.gambiae AgaP_AGAP003556 1274215   XP_313303 72
C.elegans rpl-3 175501   NP_001021254 72
S.pombe rpl301 2542265   NP_593471 70
S.pombe rpl302 2543309   NP_594780 70
S.cerevisiae RPL3 854229   NP_014706 69
A.thaliana RPL3B 842454   NP_176352 68
A.thaliana RP1 840916   NP_001185151 67
N.crassa NCU06843 3879466   XP_963317 67
P.falciparum PF10_0272 810429   XP_001347556 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)