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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. H2AFZ, H2A histone family, member Z
Sequence ID:NM_002106
Entrez Gene ID:3015
Ensembl ID:ENSG00000164032

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 100869242 - 100871512

NM_002106 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
5441100869243100869679
442571100869967100870096
572685100870429100870542
686763100870819100870896
764951100871324100871511

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4271353Full LengthBC018002H2A histone family, member Z
4281642Full LengthBC020936H2A histone family, member Z
6175124Full LengthBC103743H2A histone family, member Z

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002097  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002106 NP_002097 P0C0S5 Histone

Related Sequences

 
mRNAGenPeptSwissProt
M37583 AAA35984 P0C0S5
BC018002 AAH18002 P0C0S5
BC020936 AAH20936 P0C0S5
BC103743 AAI03744 P0C0S5
DQ893216 ABM84142  
DQ896545 ABM87544  
D28450 BAA05816  
AK315413 BAG37803 P0C0S5
X52317 CAA36553 P0C0S5
CR457415 CAG33696 P0C0S5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens H2AFZ NP_002097 M.musculus H2afz 51788 Gene Info NP_058030 100
R.norvegicus H2afz 58940   NP_073165 100
A.thaliana HTA9 841707   NP_175683 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)