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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEPHS2, selenophosphate synthetase 2
Sequence ID:NM_012248
Entrez Gene ID:22928
Ensembl ID:ENSG00000179918

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 30454952 - 30457195

NM_012248 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2622913045495830457223

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961275Full LengthBC002381selenophosphate synthetase 2
3923979Full LengthBC016643selenophosphate synthetase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036380  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_012248 NP_036380 Q99611 EC 2.7.9.3 AIRS
AIRS_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U43286 AAC50958 Q99611 EC 2.7.9.3
BC002381 AAH02381 Q99611 EC 2.7.9.3
BC016643 AAH16643 Q99611 EC 2.7.9.3
AK092003 BAC03787 Q8NAW0  
AK093889 BAC04245 Q8N9T3  
AK303275 BAG64355 B4E093  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEPHS2 NP_036380 R.norvegicus Sephs2 308993   NP_001073358 91
M.musculus Sephs2 20768 Gene Info NP_033292 90
C.elegans seld-1 189912   NP_502604 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)