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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TSPAN5, Tetraspanin 5
Sequence ID:NM_005723
Entrez Gene ID:10098
Ensembl ID:ENSG00000168785

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 99393420 - 99579724

NM_005723 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1122309939151899393737
223123479939733999397455
234823959939756399397610
239625219939983599399960
252226929940315599403325
269328399940788899408034
284028909942882899428878
289134069957929699579811

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3895933Full LengthBC009704tetraspanin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005714  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005723 NP_005714 P62079 Tetraspannin

Related Sequences

 
mRNAGenPeptSwissProt
AF065389 AAC17120 P62079
BC009704 AAH09704 P62079
EU832265 ACE86835  
EU832172 ACE87522  
HQ447365 ADQ31851  
AK315723 BAG38079 P62079
AK295385 BAH12053 B7Z317
CR541809 CAG46608 P62079
CR541829 CAG46628 Q6FHC5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TSPAN5 NP_005714 M.musculus Tspan5 56224 Gene Info NP_062517 100
R.norvegicus Tspan5 362048   NP_001004090 100
D.melanogaster Tsp26A 33838   NP_001097093 48
C.elegans tsp-12 177890   NP_501853 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)