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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPS4X, ribosomal protein S4, X-linked
Sequence ID:NM_001007
RefSeqGene ID:NG_012524
Entrez Gene ID:6191
Ensembl ID:ENSG00000198034

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 110648604 - 110650478

NM_001007 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21707149245371492621
1713287149308171493238
3295007149365071493821
5015987149490271494999
5997797149539371495573
7808577149600671496083
8589567149704271497140

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961540Full LengthBC000472ribosomal protein S4, X-linked
5505465Full LengthBC071662ribosomal protein S4, X-linked
40003600Full LengthBC100903ribosomal protein S4, X-linked
40003601Full LengthBC100904ribosomal protein S4, X-linked
3352599IncompleteBC007308ribosomal protein S4, X-linked

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000998  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001007 NP_000998 P62701 KOW
Ribosomal_S4e
RS4NT

Related Sequences

 
mRNAGenPeptSwissProt
M22146 AAA36597 P62701
M58458 AAA63255 P62701
BC000472 AAH00472 P62701
BC007308 AAH07308 Q96IR1
BC071662 AAH71662 P62701
BC100903 AAI00904 P62701
BC100904 AAI00905 P62701
DQ893596 ABM84522  
DQ894924 ABM85850  
AK222479 BAD96199 Q53HV1
AK311745 BAG34688 B2R491
AK097914 BAG53549 B2R491
Z70767 CAA94808 P62701
CR456735 CAG33016 P62701

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS4X NP_000998 R.norvegicus Rps4y2 690845   NP_001103082 93
M.musculus Gm6816 627967 Gene Info XP_897768 86
D.melanogaster RpS4 39484   NP_729871 76
N.crassa NCU02181 3880400   XP_964251 75
S.cerevisiae RPS4B 856610   NP_012073 73
S.cerevisiae RPS4A 853610   NP_012679 73
S.pombe rps403 2543486   NP_594174 72
S.pombe rps401 2540649   NP_596350 72
A.gambiae AgaP_AGAP006871 1270207   XP_308886 71
S.pombe rps402 2540325   NP_595677 71
A.thaliana AT2G17360 816243   NP_565414 70
A.thaliana AT5G58420 835955   NP_200650 70
A.thaliana AT5G07090 830600   NP_568179 70
C.elegans rps-4 177481   NP_501103 65
P.falciparum PF11_0065 810617   XP_001347741 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)