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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL17A1, collagen, type XVII, alpha 1
Sequence ID:NM_000494
NM_130778
RefSeqGene ID:NG_007069
Entrez Gene ID:1308
Ensembl ID:ENSG00000065618

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
EPIDERMOLYSIS BULLOSA, JUNCTIONAL, NON-HERLITZ TYPEITGB4
LAMA3
LAMB3
LAMC2

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 105791045 - 105792050


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068264Full LengthBC168368collagen, type XVII, alpha 1
3688634IncompleteBC004478collagen, type XVII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000485  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000494 NP_000485 Q9UMD9 Collagen

Related Sequences

 
mRNAGenPeptSwissProt
M91669 AAA35605 Q9UMD9
M63730 AAA51839 Q9UMD9
BC004478 AAH04478 Q9UMD9
BC168368 AAI68368 Q9UMD9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL17A1 NP_000485 M.musculus Col17a1 12821 Gene Info NP_031758 84
R.norvegicus Col17a1 294027   NP_001099836 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)