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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. KCNS1, potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1
Sequence ID:NM_002251
Entrez Gene ID:3787
Ensembl ID:ENSG00000124134

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 43720950 - 43729753

NM_002251 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1930494372095043723980
305040834372630243727335
408441624372780143727879
416343644372880043729001
436545564372956143729752

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9052754Full LengthBC144234potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1
30915420Full LengthBC075033potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1
30915626Full LengthBC075034potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1
40146979Full LengthBC132957potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1
40146981Full LengthBC132959potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002242  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002251 NP_002242 Q96KK3 Ion_trans
K_tetra

Related Sequences

 
mRNAGenPeptSwissProt
AF043473 AAC13165 Q96KK3
BC075033 AAH75033 Q96KK3
BC075034 AAH75034 Q96KK3
BC132957 AAI32958 A2RUL8
BC132959 AAI32960 Q96KK3
BC144234 AAI44235 Q96KK3
AK289735 BAF82424 A2RUL8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KCNS1 NP_002242 R.norvegicus Kcns1 117023   NP_446406 91
M.musculus Kcns1 16538 Gene Info NP_032461 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)