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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TXNL1, thioredoxin-like 1
Sequence ID:NM_004786
NR_024546
Entrez Gene ID:9352
Ensembl ID:ENSG00000091164

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18q21.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 54275509 - 54305658

NM_004786 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
82405427005454270286
2413455427822354278327
3465185428165454281826
5195885428347554283544
5897115428523454285356
7128855429151854291691
8869825429359154293687
98313295430557354305919

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3534029Full LengthBC001156thioredoxin-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004777  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004786 NP_004777 O43396 Thioredoxin
DUF1000

Related Sequences

 
mRNAGenPeptSwissProt
AF051896 AAC05830 O43396
AF003938 AAC39599 O43396
AF052659 AAC39898 O43396
BC001156 AAH01156 O43396
DQ891846 ABM82772  
DQ895034 ABM85960  
EU176640 ABW03441  
AB209263 BAD92500 Q59G46
AK313653 BAG36407 B2R960
AK094926 BAG52957 B3KT45

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TXNL1 NP_004777 M.musculus Txnl1 53382 Gene Info NP_058072 99
R.norvegicus Txnl1 140922   NP_543163 99
D.melanogaster Txl 38646   NP_523938 50
A.gambiae AgaP_AGAP005462 1276155   XP_315465 49
C.elegans Y54E10A.3 171897   NP_491127 46
A.thaliana AT3G04780 819638   NP_566238 44
S.pombe txl1 2541028   NP_595306 40
N.crassa NCU02520 3881849   XP_965651 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)