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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SSR1, signal sequence receptor, alpha
Sequence ID:NM_003144
Entrez Gene ID:6745
Ensembl ID:ENSG00000124783

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 7287803 - 7313435

NM_003144 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19889372812897290163
8894898772956247295717
8988906672981557298233
9067914372989797299055
9144940673015427301804
9407949473037827303869
9495960773101497310261
9608987473132747313540

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4054116Full LengthBC007710signal sequence receptor, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003135  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003144 NP_003135 P43307 TRAP_alpha

Related Sequences

 
mRNAGenPeptSwissProt
AF156965 AAD48778 P43307
BC007710 AAH07710 P43307
BT007387 AAP36051 P43307
DQ892751 ABM83677  
EU176743 ABW03544  
AK075562 BAC11701 P43307
AK222762 BAD96482 P43307
AK222809 BAD96529 P43307
AK291550 BAF84239 P43307
AK312653 BAG35536 B2R6N9
Z12830 CAA78290 P43307
CR456961 CAG33242 P43307

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SSR1 NP_003135 R.norvegicus Ssr1 361233   NP_001008891 96
M.musculus Ssr1 107513 Gene Info NP_080241 95
A.gambiae AgaP_AGAP001721 1281453   XP_321364 50
D.melanogaster l(1)G0320 326234   NP_572567 45
C.elegans trap-1 171865   NP_491076 40
A.thaliana AT2G21160 816651   NP_565498 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)