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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CXCR5, Chemokine (C-X-C motif) receptor 5
Sequence ID:NM_001716
NM_032966
Entrez Gene ID:643
Ensembl ID:ENSG00000160683

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118754474 - 118765828

 Exon Info From UCSC:
NM_001716
NM_032966

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5219901Full LengthBC110352chemokine (C-X-C motif) receptor 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001707  NP_116743  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001716 NP_001707 P32302 7tm_1
NM_032966 NP_116743   7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC110352 AAI10353 Q2YD84
AK291512 BAF84201 A8K647
X68149 CAA48252 P32302
X68829 CAA48723 P32302

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CXCR5 NP_001707 M.musculus Cxcr5 12145 Gene Info NP_031577 84
R.norvegicus Cxcr5 29363   NP_445755 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)