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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLPX, ClpX caseinolytic peptidase X homolog (E. coli)
Sequence ID:NM_006660
Entrez Gene ID:10845
Ensembl ID:ENSG00000166855

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q22.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 65442783 - 65477563

 Exon Info From UCSC:
NM_006660

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020476Full LengthBC136487ClpX caseinolytic peptidase X homolog (E. coli)
40146404Full LengthBC130373ClpX caseinolytic peptidase X homolog (E. coli)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006651  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006660 NP_006651 O76031 AAA_2

Related Sequences

 
mRNAGenPeptSwissProt
BC130373 AAI30374 O76031
BC136487 AAI36488 O76031
AK292316 BAF85005 O76031
AJ006267 CAA06933 O76031
AL136922 CAB66856 Q9H072

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLPX NP_006651 M.musculus Clpx 270166 Gene Info NP_035932 96
R.norvegicus Clpx 300786   NP_001007804 96
A.gambiae AgaP_AGAP002996 1272962   XP_563112 66
D.melanogaster CG4538 42369   NP_732463 60
A.thaliana AT1G33360 840230   NP_564423 54
A.thaliana CLPX 835416   NP_568792 54
A.thaliana AT5G49840 835047   NP_568714 52
C.elegans D2030.2 172511   NP_001021076 46
N.crassa NCU05427 3879398   XP_963250 44
S.cerevisiae MCX1 852528   NP_009786 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)