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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TTC39A, Tetratricopeptide repeat domain 39A
Sequence ID:NM_001080494
NM_001144832
Entrez Gene ID:22996
Ensembl ID:ENSG00000085831

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p32.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 51762902 - 51796999

 Exon Info From UCSC:
NM_001080494
NM_001144832

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063983Full LengthBC160047tetratricopeptide repeat domain 39A
4827153IncompleteBC028374tetratricopeptide repeat domain 39A

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001080494 NP_001073963    
NM_001144832 NP_001138304    

Related Sequences

 
mRNAGenPeptSwissProt
AF007170 AAC39582 Q5SRH9
BC004399 AAH04399 Q5SRH9
BC028374 AAH28374 Q5SRH9
BC160047 AAI60047  
AB007921 BAA32297 Q5SRH9
AK298019 BAH12705 B7Z4W9
AK301587 BAH13518 B7Z782

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TTC39A NP_001073963 R.norvegicus Ttc39a 298366   NP_001127991 94
M.musculus Ttc39a 230603 Gene Info NP_001139420 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)