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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC3A1, solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1
Sequence ID:NM_000341
RefSeqGene ID:NG_008233
Entrez Gene ID:6519
Ensembl ID:ENSG00000138079

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CYSTINURIASLC7A9

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p16.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 44502615 - 44547962

NM_000341 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15084450259644503103
5096884450785444508033
6898434450852544508679
8449694451317044513295
97010894452710944527228
109012144452814144528265
121514104453128144531476
141115784453972444539891
157916954454097344541089
169623174454733744547958

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4556946Full LengthBC022386solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1
7939469Full LengthBC093624solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1
7939471Full LengthBC093626solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000332  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000341 NP_000332 Q07837 Alpha-amylase

Related Sequences

 
mRNAGenPeptSwissProt
M95548 AAA35500 Q07837
L11696 AAA81778 Q07837
BC022386 AAH22386 Q07837
BC093624 AAH93624 Q07837
BC093626 AAH93626 Q07837
DQ023512 AAY89643 Q4J6B9
DQ023513 AAY89644 Q4J6B8
DQ023514 AAY89645 Q4J6B7
DQ023515 AAY89646 Q4J6B6
DQ023516 AAY89647 Q4J6B5
DQ023517 AAY89648 Q4J6B4
DQ892031 ABM82957  
DQ895222 ABM86148  
AB033549 BAB16841 Q07837
AK223146 BAD96866 Q07837
AK289636 BAF82325 Q07837
AK313157 BAG35975 B2R7X8
AK091932 BAG52443 B3KRN1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC3A1 NP_000332 M.musculus Slc3a1 20532 Gene Info NP_033231 81
R.norvegicus Slc3a1 29484   NP_058912 80
D.melanogaster CG14935 34598   NP_723693 40
A.gambiae AgaP_AGAP008965 1279928   XP_319713 40
D.melanogaster CG14934 34597   NP_609522 38
N.crassa NCU06523 3877943   XP_961795 35
C.elegans atgp-2 175125   NP_497043 33
C.elegans atgp-1 178504   NP_503064 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)