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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYCP1, synaptonemal complex protein 1
Sequence ID:NM_003176
Entrez Gene ID:6847
Ensembl ID:ENSG00000198765

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13-p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 115397488 - 115520225

 Exon Info From UCSC:
NM_003176

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8991982Full LengthBC126266synaptonemal complex protein 1
9052539Full LengthBC144019synaptonemal complex protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003167  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003176 NP_003167 Q15431 SCP-1

Related Sequences

 
mRNAGenPeptSwissProt
AF273043 AAG34903 Q9H2G7
BC105299 AAI05300 Q3MHC4
BC126266 AAI26267 Q15431
BC144019 AAI44020 B7ZLS9
D67035 BAA22586 Q15431
X95654 CAA64956 Q15431

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYCP1 NP_003167 R.norvegicus Sycp1 25276   NP_036942 75
M.musculus Sycp1 20957 Gene Info NP_035646 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)