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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PPM1F, protein phosphatase, Mg2+/Mn2+ dependent, 1F
Sequence ID:NM_014634
Entrez Gene ID:9647
Ensembl ID:ENSG00000100034

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 22277360 - 22300470

NM_014634 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1940702227379222277843
407141642227994122280034
416543082228551922285662
430944972228776222287950
449847002228839522288597
470148492229390322294051
485051152230021422300479
511651692230716322307216

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5421075Full LengthBC071989protein phosphatase 1F (PP2C domain containing)
6450839Full LengthBC105599protein phosphatase 1F (PP2C domain containing)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055449  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_014634 NP_055449 P49593 EC 3.1.3.16 PP2C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC071989 AAH71989 Q6IPC0  
BC105599 AAI05600 Q0VGL7  
AF305840 AAL15579 P49593 EC 3.1.3.16
AF520615 AAM76059 P49593 EC 3.1.3.16
EU831529 ACE86448    
EU831437 ACE87124    
D13640 BAA02803 P49593 EC 3.1.3.16
AK291628 BAF84317 P49593 EC 3.1.3.16
AK126377 BAG54318 B3KX06  
AK294557 BAH11809 B7Z2C3  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PPM1F NP_055449 M.musculus Ppm1f 68606 Gene Info NP_789803 80
R.norvegicus Ppm1f 287931   NP_786931 80
D.melanogaster CG10376 35126   NP_609899 37
C.elegans fem-2 175217   NP_497224 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)