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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRRT, Serrate RNA effector molecule homolog (Arabidopsis)
Sequence ID:NM_015908
NM_001128852
NM_001128853
NM_001128854
Entrez Gene ID:51593
Ensembl ID:ENSG00000087087

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 100483328 - 100486285

 Exon Info From UCSC:
NM_015908
NM_001128852
NM_001128853
NM_001128854

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40035609Full LengthBC109117serrate RNA effector molecule homolog (Arabidopsis)
3505975IncompleteBC000082serrate RNA effector molecule homolog (Arabidopsis)
5427083IncompleteBC069249serrate RNA effector molecule homolog (Arabidopsis)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056992  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001128852 NP_001122324    
NM_001128853 NP_001122325    
NM_001128854 NP_001122326    
NM_015908 NP_056992 Q9BXP5 ARS2

Related Sequences

 
mRNAGenPeptSwissProt
AF082871 AAD17774 Q9BXP5
BC000082 AAH00082 Q9BXP5
BC069249 AAH69249 Q9BXP5
BC109117 AAI09118 Q9BXP5
AF248955 AAM00189 Q9BXP5
AF112994 AAP97227 Q7Z4Y3
AK296131 BAG58876 Q9BXP5
AK302820 BAG64018 Q9BXP5
AL096723 CAB46374 Q9BXP5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRRT NP_056992 M.musculus Srrt 83701 Gene Info NP_113582 98
A.gambiae SRRT_ANOGA 1272662   XP_559074 51
D.melanogaster Ars2 35539   NP_724454 49
C.elegans E01A2.2 171996   NP_491302 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)