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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LSM3, LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Sequence ID:NM_014463
Entrez Gene ID:27258
Ensembl ID:ENSG00000170860

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 14220336 - 14239838

NM_014463 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11541422022714220380
1552651422305914223169
2663611422543614225531
3626951423953514239868

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3828636Full LengthBC007055LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055278  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014463 NP_055278 P62310 LSM

Related Sequences

 
mRNAGenPeptSwissProt
AF182289 AAD56227 P62310
AF182418 AAG14954 P62310
BC007055 AAH07055 P62310
AK312189 BAG35122 B2R5H5
AJ238095 CAB45866 P62310
CR457185 CAG33466 P62310

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LSM3 NP_055278 M.musculus Lsm3 67678 Gene Info NP_080585 100
R.norvegicus Lsm3 297455   NP_001100081 100
A.thaliana AT1G76860 844021   NP_177812 82
A.thaliana AT1G21190 838714   NP_173542 80
D.melanogaster LSm3 42842   NP_001163707 77
C.elegans lsm-3 178303   NP_502579 71
S.pombe lsm3 2540212   NP_595747 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)