Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LTBR, lymphotoxin beta receptor (TNFR superfamily, member 3)
Sequence ID:NM_001270987
NM_002342
Entrez Gene ID:4055
Ensembl ID:ENSG00000111321

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 6493333 - 6500737

Transcript StartTranscript EndChromosomal Start Chromosomal End
126464933566493619
26536164937536493849
36248764941876494312
48864064943926494544
64173764952316495327
73883564955126495609
83694364975636497670
94496964979656497990
970119864992776499505
1199210564998256500731

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4703362Full LengthBC026262lymphotoxin beta receptor (TNFR superfamily, member 3)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002333  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270987 NP_001257916    
NM_002342 NP_002333 P36941 TNFR_c6

Related Sequences

 
mRNAGenPeptSwissProt
L04270 AAA36757 P36941
BC026262 AAH26262 P36941
DQ891995 ABM82921  
DQ895185 ABM86111  
AK095418 BAG53051 B3KTD9
AK293187 BAH11468 B7Z1D2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LTBR NP_002333 M.musculus Ltbr 17000 Gene Info NP_034866 70
R.norvegicus Ltbr 297604   NP_001008316 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)