Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC25A1, solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1
Sequence ID:NM_001256534
NM_005984
NR_033687
NR_046298
Entrez Gene ID:6576
Ensembl ID:ENSG00000100075

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 19163333 - 19166278

Transcript StartTranscript EndChromosomal Start Chromosomal End
226841916309419163756
6857581916393319164006
7598741916409019164205
8759791916435819164462
98010641916463219164716
106512031916523919165377
120413031916545419165553
130414111916564519165752
141216201916609219166300

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2957917Full LengthBC004980solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1
2958945Full LengthBC008061solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005975  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256534 NP_001243463    
NM_005984 NP_005975 P53007 Mito_carr

Related Sequences

 
mRNAGenPeptSwissProt
U25147 AAB08515 P53007
BC004980 AAH04980 P53007
BC008061 AAH08061 P53007
L75823 AAL40090 P53007
DQ892916 ABM83842  
DQ896165 ABM87164  
DQ896170 ABM87169  
HM037273 ADI78884 D9HTE9
AK292313 BAF85002 P53007
AK298204 BAG60474 B4DP62

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC25A1 NP_005975 R.norvegicus Slc25a1 29743   NP_059003 95
M.musculus Slc25a1 13358 Gene Info NP_694790 94
D.melanogaster CG6783 3772232   NP_001027177 68
C.elegans K11H3.3 176398   NP_499187 65
S.cerevisiae CTP1 852594   NP_009850 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta