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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RRP1, Ribosomal RNA processing 1 homolog (S. cerevisiae)
Sequence ID:NM_003683
Entrez Gene ID:8568
Ensembl ID:ENSG00000160214

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 45209456 - 45223980

 Exon Info From UCSC:
NM_003683

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820455Full LengthBC000380ribosomal RNA processing 1 homolog (S. cerevisiae)
4178914IncompleteBC014787ribosomal RNA processing 1 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003674  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003683 NP_003674 P56182 Nop52

Related Sequences

 
mRNAGenPeptSwissProt
U79775 AAC51625 P56182
BC000380 AAH00380 P56182
BC014787 AAH14787 Q6PJJ2
AY033999 AAK57542 Q96J73
DQ891391 ABM82317  
DQ894567 ABM85493  
AK223185 BAD96905 Q53FR7
AK223215 BAD96935 Q53FR7
AK303000 BAG64135 B4DZM3
AL137757 CAB70909 P56182

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RRP1 NP_003674 M.musculus Rrp1 18114 Gene Info NP_035055 74
R.norvegicus Rrp1 309674   NP_001012073 74
S.pombe SPBC9B6.07 2541297   NP_595749 40
D.melanogaster Nnp-1 44391   NP_651976 32
A.gambiae AgaP_AGAP002684 1273278   XP_312240 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)