Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. APOC1, apolipoprotein C-I
Sequence ID:NM_001645
RefSeqGene ID:NG_012859
Entrez Gene ID:341
Ensembl ID:ENSG00000130208

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 45417576 - 45418151

NM_001645 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1704541792045417989
711484541812845418205
1492844541944645419581
2854614542242945422605

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3889900Full LengthBC009698apolipoprotein C-I
6567705Full LengthBC055093apolipoprotein C-I

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001636  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001645 NP_001636 P02654 ApoC-I

Related Sequences

 
mRNAGenPeptSwissProt
M27359 AAA51762 P02654
BC009698 AAH09698 P02654
BC055093 AAH55093 P02654
BT007142 AAP35806 P02654
GQ129384 ACT64518  
GQ129385 ACT64519  
AK312036 BAG34973 B2R526
X00570 CAA25235 P02654
CR456907 CAG33188 P02654
AM392727 CAL37605 P02654

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APOC1 NP_001636 M.musculus Apoc1 11812 Gene Info NP_001103479 70
R.norvegicus Apoc1 25292   NP_001103466 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)