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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CHSY1, Chondroitin sulfate synthase 1
Sequence ID:NM_014918
RefSeqGene ID:NG_031908
Entrez Gene ID:22856
Ensembl ID:ENSG00000131873

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15q26.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 101715932 - 101792137

NM_014918 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
193275101715928101719184
32763771101775286101775781
37724567101791341101792136

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5751618Full LengthBC046247chondroitin sulfate synthase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055733  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_014918 NP_055733 Q86X52 EC 2.4.1.226
EC 2.4.1.175
CHGN

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC046247 AAH46247 Q86X52 EC 2.4.1.226
EC 2.4.1.175
AY358529 AAQ88893 Q86X52 EC 2.4.1.226
EC 2.4.1.175
AB023207 BAA76834 Q86X52 EC 2.4.1.226
EC 2.4.1.175
AB071402 BAB64936 Q86X52 EC 2.4.1.226
EC 2.4.1.175
AK296943 BAG59492 B4DLD0  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHSY1 NP_055733 M.musculus Chsy1 269941 Gene Info NP_001074632 95
R.norvegicus Chsy1 292999   NP_001099738 95
A.gambiae AgaP_AGAP001010 1270501   XP_309203 48
D.melanogaster CG9220 32497   NP_996440 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)