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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PDZD11, PDZ domain containing 11
Sequence ID:NM_016484
RefSeqGene ID:NG_016799
Entrez Gene ID:51248
Ensembl ID:ENSG00000120509

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 69506444 - 69509767

NM_016484 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17566950621069506965
7578176950712569507185
8189166950758169507679
9179736950796669508022
97410576950827969508362
105811576950910469509203
115812466950970969509797

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3530647Full LengthBC012996PDZ domain containing 11
30559280IncompleteBC089433PDZ domain containing 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057568  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016484 NP_057568 Q5EBL8 PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AF151061 AAF36147 Q5EBL8
BC012996 AAH12996 Q5EBL8
BC089433 AAH89433 Q5EBL8
AY358829 AAQ89188 Q5EBL8
BX537725 CAD97820 Q5EBL8
CR457149 CAG33430 Q5EBL8
AM393208 CAL38086  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PDZD11 NP_057568 M.musculus Pdzd11 72621 Gene Info NP_082579 97
R.norvegicus Pdzd11 302422   NP_001100415 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)