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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ST6GALNAC6, ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Sequence ID:NM_013443
Entrez Gene ID:30815
Ensembl ID:ENSG00000160408

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 130648843 - 130658610

NM_013443 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
191485130647600130649066
14861593130649762130649869
15942000130652915130653321
20012180130656790130656969
21812271130658520130658610
22722326130660234130660288
23272416130661781130661870

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3009935Full LengthBC006564ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
3507812Full LengthBC016299ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
4128833Full LengthBC007802ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038471  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013443 NP_038471 Q969X2 Glyco_transf_29

Related Sequences

 
mRNAGenPeptSwissProt
BC006564 AAH06564 Q969X2
BC007802 AAH07802 Q969X2
BC016299 AAH16299 Q969X2
AY358672 AAQ89035 Q969X2
JF432648 ADZ15865  
AB035173 BAA87035 Q969X2
AK023900 BAB14715 Q969X2
AK057100 BAG51863 Q969X2
AK300534 BAG62242 B4DU80
AJ507293 CAD45373 Q969X2
CR457318 CAG33599 Q969X2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ST6GALNAC6 NP_038471 M.musculus St6galnac6 50935 Gene Info NP_058669 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)